Publications – College of Computer Studies

2017

Signature Specimen Matching using ANN, Louie Lester E. Pascual, John Dinnex M. Valeros, A. Jamil L. Arazas, and Allan A. Sioson, in Proceedings of the 17th Philippine Computing Science Congress (PCSC2017), University of San Carlos, Talamban Campus, Cebu City, Philippines, (16-18 March 2017). ISSN: 1908-1146.

2016

Migration and evaluation of a framework for developing embodied cognition learning games, Jonathan D.L. Casano, Hannah Tee, Jenilyn L. Agapito, Ivon Arroyo, and Ma. Mercedes T. Rodrigo, in VRCAI’16 Proceedings of the 3rd Asia-Europe Symposium on Simulation and Serious Gaming, Zhuhai, China, (3-4 December 2016) pp. 199-203.
Investigating the Incubation Effect among Students playing Physics Playground, Joshua C. Martinez, Jun Rangie Obispo, May Marie Talandron, and Ma. Mercedes T. Rodrigo, in Proceedings of the 24th International Conference on Computers in Education, Asia-Pacific Society for Computers in Education, Mumbai, India (28 November to 2 December 2016).
Web-Sched: A Collaborative Scheduling System, Ralph Nicole N. Andalis, Jenek Michael L. Sarte, Jerick B. David, and Allan A. Sioson, in Proceedings of the 14th National Conference on IT Education (NCITE2016), DMC College Foundation, Dipolog City, Zamboanga del Norte, Philippines (20-22 October 2016), pp. 97-103.

2015

A Study on Machine Assisted Parsing of Bibliographic Data, Kier Sostenes N. Guevara, Redan Benedict S. Alcaide, and Allan A. Sioson, in Proceedings of the 13th National Conference on Information Technology Education (NCITE2015), Angeles University Foundation, Angeles, Pampanga, Philippines, (22-24 October 2015), pp. 41-44.
Color and Shape Analysis for Image-based Detection and Characterization of Skin Lesion, Marianne P. Ang, Vladimir Y. Mariano, and Tita Lina O. Villanueva, Philippine Information Technology Journal, 8 (1): 3 – 7 (January to June 2015). ISSN: 2012-0761.

2014

Analysis of Classroom Utilization Using Information Visualization, Mark V. Montealegre and Allan A. Sioson, in Proceedings of the 12th National Conference on Information Technology Education (NCITE2014), Boracay, Philippines, (24-25 October 2014), pp. 134-141.
Xiphias: A Competitive Classroom Control System to Facilitate the Gamification of Academic Evaluation of Novice C++ Programmers, Jenilyn L. Agapito, Jonathan DL Casano, and Joshua C. Martinez, in Proceedings of the International Symposium on Computing for Education (ISCE2014), Boracay, Philippines, (23-24 October 2014), pp. 9-15.
Multi-Path Learning Evaluation Tool For Educators, Wenyville N. Galang and Joshua C. Martinez, in Proceedings of the International Symposium on Computing for Education (ISCE2014), Boracay, Philippines, (23-24 October 2014), pp. 38-47.
Visual Communication Using Motion Design for Infographics, John Francis Laurin Bozar and Danilo B. Isidro, in Proceedings of the International Symposium on Computing for Education (ISCE2014), Boracay, Philippines, (23-24 October 2014), pp. 89-103.
Towards the Creation of the Production Workflow of an Inspired 3D Animated Short, Omar P. Aguilar and Danilo B. Isidro, in Proceedings of the International Symposium on Computing for Education (ISCE2014), Boracay, Philippines, (23-24 October 2014), pp. 81-88.
Exploring Similarity of Lexical Features of C++ Programs, Allan A. Sioson, Kier Sostenes N. Guevara, and Redan Benedict S. Alcaide, in Proceedings of the 14th Philippine Computing Science Congress (PCSC2014), University of Immaculate Conception, Davao City, (6 – 8 March 2014) pp. 154-159. ISSN: 1908-1146.

2013

Multi-document Summarization of Twitter Microblogs using Latent Dirichlet Allocation and Phrase Reinforcement, John Sixto G. Santos and Ma. Regina Justina E. Estuar, in Proceedings of the 7th IEEE International Conference on Humanoid, Nanotechnology, Information Technology, Communication and Control, Environment, and Management (IEEE HNICEM – ISCIII 2013), Puerto Princesa, Palawan, Philippines, (12-16 November 2013).
On Generating Screened Sketches, Raphael Henry M. Garay and Allan A. Sioson, Philippine Information Technology Journal, 6 (2), 9-13 (October 2013). ISSN: 2012-0761.
Color and Shape Analysis for Image-based Detection and Characterization of Skin Lesion, Marianne P. Ang, Vladimir Y. Mariano, and Tita Lina O. Villanueva, in Proceedings of the 11th National Conference on Information Technology Education (NCITE2013), Villa Paraiso Resort, Camiguin, Philippines, (24-26 October 2013) pp. 61-65.
Modifying the K-Medoid Algorithm to Improve Gene Expression Data Clustering Using Biological Homogeneity Index (BHI) and Biological Stability Index (BSI). Jelly P. Aureus and Andrei D. Coronel, in Proceedings of the 11th National Conference on Information Technology Education (NCITE2013), Villa Paraiso Resort, Camiguin, Philippines, (24-26 October 2013) pp. 108-119.
DocumentsHub: Document Management System in a Small College, Ronel Simon, Allan A. Sioson, in Proceedings of the 11th National Conference on Information Technology Education (NCITE2013), Villa Paraiso Resort, Camiguin, Philippines, (24-26 October 2013) pp. 155-159.
Pair Sharing Partition Flash Code, Adrian Leo Pajarillo and Proceso Fernandez, Jr., in Proceedings of the 11th National Conference on Information Technology Education (NCITE2013), Villa Paraiso Resort, Camiguin, Philippines, (24-26 October 2013) pp. 204-208.
Experiences on the use of an automatic C++ solution grader system, Allan A. Sioson, in Proceedings of the 4th International Conference on Information, Intelligence, Systems, and Applications (IISA 2013) — Track IV: Technology, Protocols and Applications, University of Piraeus, Piraeus-Athens, Greece, (10-12 July 2013) pp. 252-257. [Scopus Indexed]
Design and Implementation of PlantArthroDB: A Plant and Arthropod Interaction Database System for Mt. Isarog Natural Park, Rhymart Manchus, Allan Macatingrao, Carol Llorente, Andrej Mikhail Valiente, Joanaviva Plopenio, Emelina Regis, Marilou Nicolas, Noel Quiming, and Allan A. Sioson, Philippine Information Technology Journal, 6 (1), 29-34 (February 2013). ISSN: 2012-0761.

2012

Gathering behaviors and affective states of learners using educational software: Challenges to research in an emerging economy, Ma. Mercedes T. Rodrigo, Jessica O. Sugay, Jenilyn L. Agapito, In Workshop Proceedings of the 20th International Conference on Computers in Education, 26-30 November 2012, Singapore, pp. 82-89. [Scopus Indexed]
Using an Automatic Program Grader, Allan A. Sioson, Philippine Information Technology Journal, 5 (2), 32-34 (October 2012). ISSN: 2012-0761.
Cloud Computing Infrastructure Services Implemented Using OpenStack Technology In Linux Platform, Lowie Vincent S. Bisana and Rey Herman R. Vidallo, in Proceedings of the 10th National Conference on Information Technology Education (NCITE 2012), 18 – 20 October 2012, Philippine Society of IT Educators, Northwestern University, Laoag City, Ilocos Norte.
An Investigation on Reaction-Diffusion-Based Mazes, Jonathan D.L. Casano and Allan A. Sioson, in Proceedings of the 10th National Conference on Information Technology Education (NCITE 2012), 18 – 20 October 2012, Philippine Society of IT Educators, Northwestern University, Laoag City, Ilocos Norte.
VSeaR: Video Search and Retrieval Through Haar Wavelet Analysis, Carol C. Llorente and Allan A. Sioson, in Proceedings of the 10th National Conference on Information Technology Education (NCITE 2012), 18 – 20 October 2012, Philippine Society of IT Educators, Northwestern University, Laoag City, Ilocos Norte.
myADNU, Bernie M. Jereza and Allan A. Sioson, in Proceedings of the 10th National Conference on Information Technology Education (NCITE 2012), 18 – 20 October 2012, Philippine Society of IT Educators, Northwestern University, Laoag City, Ilocos Norte.
Developing the Philippine Journal Citation Index Database System, Allan A. Sioson, in Proceedings of the International Conference on Journal Citation Systems in Asia Pacific Countries, 22 May 2012, Pan Pacific KLIA, Malaysia.
The Effects of an Interactive Software Agent on Student Affective Dynamics while Using an Intelligent Tutoring System, Ma. Mercedes T. Rodrigo, Ryan S.J.d. Baker, Jenilyn Agapito, Julieta Nabos, Ma. Concepcion Repalam, Salvador S. Reyes, Jr., Maria Ofelia C.Z. San Pedro, IEEE Transactions on Affective Computing, 3(2), 224-236 (April-June 2012), ISSN 1949-3045. DOI: http://doi.ieeecomputersociety.org/10.1109/T-AFFC.2011.41 [Scopus Indexed, ISI Indexed]
Design and Implementation of PlantArthroDB: A Plant and Arthropod Interaction Database System for Mt. Isarog Natural Park, Rhymart Manchus, Allan Macatingrao, Carol Llorente, Andrej Mikhail Valiente, Joanaviva Plopenio, Emelina Regis, Marilou Nicolas, Noel Quiming, and Allan A. Sioson, in Proceedings of the 12th Philippine Computing Science Congress (PCSC 2012), Organized by the Computing Society of the Philippines, De La Salle College Canlubang, Laguna, (1-3 March 2012). ISSN: 1908-1146.
Generating Screened Manga Sketches from Colored Photographs, Raphael Henry M. Garay and Allan A. Sioson, in Proceedings of the 12th Philippine Computing Science Congress (PCSC 2012), Organized by the Computing Society of the Philippines, De La Salle College Canlubang, Laguna, (1-3 March 2012). ISSN: 1908-1146.
An Analysis of Novice Programmers’ Compilation Behaviors in C++, Jenilyn L. Agapito and Ma. Mercedes T. Rodrigo, Philippine Information Technology Journal, 5 (1), 22-28 (February 2012). ISSN: 2012-0761.

2011

Hand Gesture Recognition using Color Tracking Techniques, Glenn G. Fabia and Allan A. Sioson, Philippine Information Technology Journal, 4 (2), 24-28 (October 2011). ISSN: 2012-0761. [the conference version appeared in Proceedings of the 9th National Conference on Information Technology Education (NCITE 2011), Organized by the Philippine Society of IT Educators, Palawan State University, Puerto Princesa City, Palawan (27-29 October 2011)]
Simplified Assembly Language and Microprogram Simulator, John Sixto G. Santos and Cecilbeth I. Vidallo, in Proceedings of the 9th National Conference on Information Technology Education (NCITE 2011), Organized by the Philippine Society of IT Educators, Palawan State University, Puerto Princesa City, Palawan (27-29 October 2011).
Generating Simulated cDNA Gene Expression Data for Microarray Experiments using Loop Design, Allan A. Sioson and Glenn G. Fabia, in Proceedings of the 11th Philippine Computing Science Congress (PCSC 2011), Organized by the Computing Society of the Philippines, Ateneo de Naga University, Naga City, (4-5 March 2011). ISSN: 1908-1146.
Ateneo Online Entrance Exam Result Viewer, Jelly P. Aureus and Joshua C. Martinez, Philippine Information Technology Journal, 4 (1), 32-36 (February 2011). ISSN: 2012-0761.

2010

Towards an Analysis of Novice Programmers’ Compilation Behaviours in C++, Jenilyn L. Agapito, in Proceedings of the 8th National Conference in Information Technology Education (NCITE 2010), Organized by the Philippine Society of Information Technology Educators, La Carmela de Boracay Convention Center, (20-23 October 2010).
Ateneo Online Entrance Exam Result Viewer, Jelly B. Pantoja-Aureus and Joshua C. Martinez, in Proceedings of the 8th National Conference in Information Technology Education (NCITE 2010), Organized by the Philippine Society of Information Technology Educators, La Carmela de Boracay Convention Center, (20-23 October 2010).
Comparing Disengaged behavior within a Cognitive Tutor in the USA and Philippines, Ma. Mercedes T. Rodrigo, Ryan Shaun Joazerio de Baker, Jenilyn Agapito, Julieta Nabos, Ma. Concepcion Repalam, Salvador S. Reyes, Jr., Intelligent Tutoring Systems — Lecture Notes in Computer Science, 6095, 263-265 (2010). ISBN: 978-3-642-13436-4 [also appeared in Proceedings of the 10th International Conference on Intelligent Tutoring Systems (ITS 2012): Bridges to Learning, Carnegie Mellon University, Pittsburgh, USA (14-18 June 2010)
Image Retrieval Through Wavelet Analysis, Ferdinand C. Yanto III and Allan A. Sioson, in Proceedings of the 10th Philippine Computing Science Congress (PCSC 2010), Organized by the Computing Society of the Philippines, Ateneo de Davao University, Davao City, (5-6 March 2010). ISSN: 1908-1146.
Differential expression of heat shock protein genes in preconditioning for photosynthetic acclimation in water-stressed loblolly pine, Cecilia Vasquez-Robinet, Jonathan I. Watkinson, Allan A. Sioson, Naren Ramakrishnan, Lenwood S. Heath, and Ruth Grene, Plant Physiology and Biochemistry, 48 (4), 256-264 (April 2010). ISSN: 0981-9428. DOI: http://dx.doi.org/10.1016/j.plaphy.2009.12.005 [Scopus Indexed, ISI Indexed]

2009

Enriching Programming Instruction using Visualization, Marianne P. Ang and Allan A. Sioson, Philippine Information Technology Journal, 2 (2): 31-34 (October 2009). ISSN: 2012-0761. [a conference version appeared in the Proceedings of the National Conference in IT Education (NCITE) 2009, Capitol University, Cagayan de Oro City, 21-23 October 2009. ]
Semantics of multimodal network models, Lenwood S. Heath and Allan A. Sioson, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6 (2): 271-280 (April-June 2009). ISSN: 1545-5963. DOI:http://dx.doi.org/10.1109/TCBB.2007.70242 [Scopus Indexed, ISI Indexed]
Multimodal networks: structure and operations, Lenwood S. Heath and Allan A. Sioson, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6 (2): 321-332 (April-June 2009). ISSN: 1545-5963. DOI:http://dx.doi.org/10.1109/TCBB.2007.70243 [Scopus Indexed, ISI Indexed]

2008

Webby – An Online Program Grader, Allan A. Sioson, Catherine V. Antonio, and Sharlyn Mae A. Papica, Philippine Information Technology Journal , 1 (2): 29-34 (October 2008), ISSN: 2012-0761.
Tuber development phenotypes in adapted and acclimated, drought-stressed Solanum tuberosum ssp. andigena have distinct expression profiles of genes associated with carbon metabolism, Jonathan I. Watkinson, Lori Hendricks, Allan A. Sioson, Lenwood S. Heath, Hans J. Bohnert, and Ruth Grene, Plant Physiology and Biochemistry, 46 (1): 34-45 (January 2008). ISSN: 0981-9428. DOI: http://dx.doi.org/10.1016/j.plaphy.2007.10.020 [ISI Indexed]

2007

Ethics Across National Borders, Manuel O. Diaz, Jr. and J. Weckert, Information Age, Australian Computer Society (November 2007). ISSN: 1324-5945.
Japanese Manga: Aesthetics and Iconography, Rudyard C. Pesimo, Suki,, 11(1):4-7, (June 2007). ISSN: 0118-7910.
Early PLDα-Mediated Events in Response to Progressive Drought Stress in Arabidopsis: a Transcriptome Analysis, Shrinivasrao P. Mane, Cecilia Vasquez-Robinet, Allan A. Sioson, Lenwood S. Heath, and Ruth Grene, Journal of Experimental Botany, 58 (2):241-252 (January 2007). Online ISSN: 1460-2431 – Print ISSN: 0022-0957. DOI: http://dx.doi.org/10.1093/jxb/erl262. [ISI Indexed]

2006

Accessions of Solanum tuberosum ssp. andigena show differences in photosynthetic recovery after drought stress as reflected in gene expression profiles, Jonathan I. Watkinson, Lori Hendricks, Allan A. Sioson, Cecilia Vasquez-Robinet, Verlyn Stromberg, Lenwood S. Heath, Mary Schuler, Hans J. Bohnert, Merideth Bonierbale, and Ruth Grene, Plant Science, 171 (6): 745-758 (December 2006). ISSN: 0168-9452. DOI: http://dx.doi.org/10.1016/j.plantsci.2006.07.010 [ISI Indexed]
Some fundamental operations on multimodal networks in biology, Allan A. Sioson and Lenwood S. Heath, Philippine Computing Journal , 1 (2): 13-22 (December 2006), ISSN: 1908-1995.
Response diversity of Arabidopsis thaliana ecotypes and Thellungiella halophila in elevated CO2 in the field, Pinghua Li, Allan A. Sioson, Shrinivasrao P. Mane, Alexander Ulanov, Gregory Grothaus, Lenwood S. Heath, T.M. Murali, Hans J. Bohnert, and Ruth Grene, Plant Molecular Biology, 62 (4-5): 593-609 (November 2006). Print ISSN: 0167-4412 – Online ISSN: 1573-5028. DOI: http://dx.doi.org/10.1007/s11103-006-9041-y [Scopus Indexed, ISI Indexed]
Towards a unified theory of self dual codes over Z₂ x Z₂, Bernard R. Marquez, in Proceedings of the International Congress of Mathematicians, Madrid, Spain, (22-30 August 2006). ISBN: 3037190221 9783037190227
Effects of chronic ozone exposure on gene expression in Arabidopsis thaliana ecotypes and in Thellungiella halophila, Pinghua Li, Shrinivasrao P. Mane, Allan A. Sioson, Cecilia Vasquez Robinet, Lenwood S. Heath, Hans J. Bohnert, and Ruth Grene,Plant, Cell & Environment, 29 (5): 854-868, (May 2006). Online ISSN: 1365-3040. DOI: http://dx.doi.org/10.1111/j.1365-3040.2005.01465.x [ISI Indexed]
The statistics of identifying significantly expressed genes in Expresso and TM4: a comparison, Allan A. Sioson, Shrinivasrao P. Mane, Pinghua Li, Wei Sha, Lenwood S. Heath, Hans J. Bohnert, and Ruth Grene, BMC Bioinformatics, 7:215, (20 April 2006).ISSN: 1471-2105. DOI: http://dx.doi.org/10.1186/1471-2105-7-215 [ISI Indexed]

2005

2004

Dual Codes over Direct Products, Bernardo R. Marquez, Matimyas Matematika, 27(1-3):1-9, (2004). ISSN: 0115-6926.
Measurements and Evaluation in Teaching and Learning, Arnulfo R. Reganit and Bernard R. Marquez, Mutya Publishing House, Valenzuela City, 2004.

2003

Photosynthetic acclimation is reflected in specific patterns of gene expression in drought-stressed loblolly pine, Jonathan I. Watkinson, Allan A. Sioson, Cecilia Vasquez-Robinet, Maulik Shukla, Deept Kumar, Margaret Ellis, Lenwood S. Heath, Naren Ramakrishnan, Boris Chevone, Layne T. Watson, Leonel van Zyl, Ulrika Egertsdotter, Ronald R. Sederoff, and Ruth Grene, Plant Physiology, 133 (4):1702-1716, (1 December 2003). Print ISSN: 0032-0889 – Online ISSN: 1532-2548. DOI:http://dx.doi.org/10.1104/pp.103.026914 [ISI Indexed]
Expresso and chips: Creating a next generation microarray experiment management system, Allan Sioson, Jonathan I. Watkinson, Cecilia Vasquez-Robinet, Margaret Ellis, Maulik Shukla, Deept Kumar, Naren Ramakrishnan, Lenwood S. Heath, Ruth Grene, Boris I. Chevone, Karen Kadafar, and Layne T. Watson, in Proceedings of the Next Generation Software Systems Workshop, 17th International Parallel and Distributed Processing Symposium (IPDPS’03), Nice France, 22-26 April 2003: 209. ISBN: 0-7695-1926-1.
Teaching Challenges and Research Directions in Coding Theory, Bernardo R. Marquez, Gibon, 3(1):83-91 , (2003).

2002

2001

Higher Education, E-Learning, and the Ateneo de Naga University, Manuel O. Diaz, Jr. and Arnulfo R. Reganit, Gibon, 1(2):71-89, (2001).
Wireless Application Protocol, Manuel O. Diaz, Jr., Gibon, 1(1):79-97, (2001).
Computer Services I, Manuel O. Diaz, Jr., Diwa Learning Systems, Manila, 2001.